Journals

• Neural Graph Refinement for Robust Recognition of Nuclei Communities in Histopathological Landscape. IEEE Transactions on Image Processing, 2023. Hassan, T., Li, Z., Javed, S., Dias, J., and Werghi, N. [pdf] [demo]
• Center-Focused Affinity Loss for Class Imbalance Histology Image Classification. IEEE Journal of Biomedical and Health Informatics, 2023. T. Mahbub, A. Obeid, S. Javed, J. Dias, T. Hassan, and N. Werghi. [pdf] [demo]
• DeepBLS: Deep Feature-Based Broad Learning System for Tissue Phenotyping in Colorectal Cancer WSIs. Journal of Digital Imaging, 2023. A. Baidar Bakht, S. Javed, S.Q. Gilani, H. Karki, M. Muneeb, and N. Werghi. [pdf] [demo]
• Nucleus classification in histology images using message passing network. Medical Image Analysis, 2022. Hassan, T., Javed, S., Mahmood, A., Qaiser, T., Werghi, N., and Rajpoot, N. [pdf] [demo]
• Multi-level feature fusion for nucleus detection in histology images using correlation filters. Computers in Biology and Medicine, 2022. Javed, S., Mahmood, A., Dias, J., and Werghi, N. [pdf] [demo]
• Multiplex cellular communities in multi-gigapixel colorectal cancer histology images for tissue phenotyping. IEEE Transactions on Image Processing, 2020. Javed, S., Mahmood, A., Werghi, N., Benes, K., and Rajpoot, N. [pdf] [demo]
• Spatially constrained context-aware hierarchical deep correlation filters for nucleus detection in histology images. Medical Image Analysis, 2021. Javed, S., Mahmood, A., Dias, J., Werghi, N., and Rajpoot, N. [pdf] [demo]
• Knowledge distillation driven instance segmentation for grading prostate cancer. Computers in Biology and Medicine, 2022. Hassan, T., Shafay, M., Hassan, B., Akram, M.U., ElBaz, A., Dias, J., and Werghi, N. [pdf] [demo]

Conferences

• Knowledge distillation in histology landscape by multi-layer features supervision. IEEE Journal of Biomedical and Health Informatics, 2023. Javed, S., Mahmood, A., Qaiser, T., and Werghi, N. [pdf] [demo]
• Unsupervised Mutual Transformer Learning for Multi-Gigapixel Whole Slide Image Classification. arXiv preprint arXiv:2305.02032. Javed, S., Mahmood, A., Qaiser, T., Werghi, N., and Rajpoot, N. [pdf] [demo]
• Robust Nucleus Classification with Iterative Graph Representational Learning. 2023 IEEE International Conference on Image Processing (ICIP). Hassan, T., Abdalla, M., Raja, H., Owais, M., and Werghi, N. [pdf] [demo]
• NucDETR: End-to-End Transformer for Nucleus Detection in Histopathology Images. International Workshop on Computational Mathematics Modeling in Cancer Analysis. Obeid, A., Mahbub, T., Javed, S., Dias, J., and Werghi, N. [pdf] [demo]
• Class-Balanced Affinity Loss for Highly Imbalanced Tissue Classification in Computational Pathology. International Conference on Pattern Recognition. Mahbub, T., Obeid, A., Javed, S., Dias, J., and Werghi, N. [pdf] [demo]
• Incremental instance segmentation for the Gleason tissues driven prostate cancer prognosis. 2nd International Conference on Digital Futures and Transformative Technologies (ICoDT2). Hassan, T., Ahmed, A., Hassan, B., Shafay, M., ElBaz, A., Dias, J., and Werghi, N. [pdf] [demo]
• A dilated residual hierarchically fashioned segmentation framework for extracting gleason tissues and grading prostate cancer from whole slide images. 2021 IEEE Sensors Applications Symposium (SAS). Hassan, T., Hassan, B., ElBaz, A., and Werghi, N. [pdf] [demo]
• Colorectal cancer tissue classification using semi-supervised hypergraph convolutional network. 18th International Symposium on Biomedical Imaging (ISBI). A.B. Bakht, S. Javed, H. AlMarzouqi, A. Khandoker, and N. Werghi. [pdf] [demo]
• Deep multiresolution cellular communities for semantic segmentation of multi-gigapixel histology images. IEEE/CVF International Conference on Computer Vision Workshops. Javed, S., Mahmood, A., Werghi, N., and Rajpoot, N. [PDF] [demo]